PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.GCJ0X
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 265aa    MW: 29460.5 Da    PI: 11.0887
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.GCJ0XgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.88.1e-084586450
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS
          HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50
                 +++ r ++RR+++N ++  Lr+++P++     +K++ a ++  A+eY
  Araip.GCJ0X 45 KKPRRRKQRREQLNGKYKILRSVIPSP-----TKMDRACVVGDAIEY 86
                 568899*********************.....8*****999999999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.5414190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.07E-74586IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-54586IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-55186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF102253.3E-9216248IPR019358NEMP family
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MVSRFANNNN NNDALVPATK NINRPSMVVN VKVLKKLFSV NNYQKKPRRR KQRREQLNGK  60
YKILRSVIPS PTKMDRACVV GDAIEYNKGA AQNGLNQNLT LQLSCGFPVG KSPGSPGVAV  120
VVERVRIRGL SRFRNLSKFA HSIKVKVLPA DPNIRIPNIE ICFHRAILCV LFRNASLAIG  180
MCSQGQWEKV TKGSWIRSMS LFDHKLLDIR TASSTLASSL SKSLAFYYSS AMTIGIILVI  240
LMILYQTEHC GWGVEVAKPS TKANS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14450KKPRRRK
24650PRRRK
34754RRRKQRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015963802.18e-78PREDICTED: uncharacterized protein LOC107487643
RefseqXP_016201619.16e-78PREDICTED: uncharacterized protein LOC107642693
TrEMBLV7CEV15e-57V7CEV1_PHAVU; Uncharacterized protein
STRINGGLYMA11G05040.14e-53(Glycine max)